STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0115Probable hemagglutinin-related autotransporter protein. (1672 aa)    
Predicted Functional Partners:
RSc0595
Probable outer membrane receptor signal peptide protein.
  
 
 
 0.672
RSc0118
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.630
RSc0116
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.626
RSc3065
Probable cog3713, mipa like outer membrane v transmembrane protein.
  
     0.614
RSc0117
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.604
RSc0120
Putative acetyltransferase protein.
  
     0.595
RSp0244
Probable outer membrane hemin receptor signal peptide protein.
  
   
 0.556
RSp1168
Probable transmembrane protein.
  
     0.547
RSc1959
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.500
RSc3063
Probable transmembrane sensor histidine kinase transcription regulator protein.
  
     0.464
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.