Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0122Probable substrate-binding periplasmic (pbp) abc transporter protein. (299 aa)    
Predicted Functional Partners:
gltJ
Probable glutamate/aspartate transmembrane abc transporter protein.
 
 0.830
gltK
Probable glutamate/aspartate transmembrane abc transporter protein.
 
 
 0.810
gltL
Putative glutamate/aspartate transport atp-binding abc transporter protein.
 
 
 0.784
RSc2258
Probable amino acid transmembrane abc transporter protein.
 
 
 0.678
RSc2259
Probable amino acid transmembrane abc transporter protein.
 
 
 0.553
RSp0428
Putative pseudogene protein.
 
 
 0.541
RSp0933
Probable amino acid transmembrane abc transporter protein.
 
 
 0.528
RSc2260
Probable amino-acid atp-binding abc transporter protein.
 
 
 0.524
RSp0934
Probable amino acid transmembrane abc transporter protein.
 
 
 0.523
RSc1743
Miscellaneous; hypothetical/partial homology.
 
 
 0.516
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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