STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0131Probable lipoprotein. (657 aa)    
Predicted Functional Partners:
pehC
Polygalacturonase transmembrane protein; Belongs to the glycosyl hydrolase 28 family.
 
     0.764
RSp0641
Probable non ribosomal peptide synthetase protein.
   
 0.715
hrpB
Regulatory hrpb. transcription regulator protein; Positive regulation of hypersensitive response genes involved in plant pathogenicity and partly of its own synthesis in minimal medium.
  
     0.595
RSp0709
Putative cytochrome p-450-like monooxygenase oxidoreductase protein; Belongs to the cytochrome P450 family.
 
 0.573
RSp0231
Probable cog4313, involved in meta-pathway of phenol degradation signal peptide protein.
  
     0.513
RSc1806
Probable polyketide synthase protein.
   
 0.511
RSc0079
Probable transmembrane protein.
    
   0.501
rcsC
Probable capsular synthesis regulatory (two-component sensor kinase and response regulator hybrid) transcription regulator protein.
 
   
 0.489
pglA
Polygalacturonase precursor (pga) (pectinase). signal peptide protein; Contributes to the wilt disease production on tomato; Belongs to the glycosyl hydrolase 28 family.
 
     0.488
rplF
Probable 50s ribosomal subunit protein l6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.470
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.