STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0138Hypothetical protein of unknown function duf344. (275 aa)    
Predicted Functional Partners:
ppk
Probable polyphosphate kinase protein; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
   
 0.864
ppx
Probable exopolyphosphatase protein.
 
  
 0.689
RSp0057
Putative 4-vinyl reductase motif harboring protein.
   
    0.670
RSc1280
Probable iron-sulfur 4fe-4s ferredoxin transmembrane protein.
   
    0.667
RSc2967
Probable outer membrane w-related protein signal peptide.
   
    0.650
ompW
Putative outer membrane w signal peptide protein.
   
    0.650
dapF
Diaminopimelate epimerase (dap epimerase) protein; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.608
hemN
Probable oxygen-independent coproporphyrinogen III oxidase oxidoreductase protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.539
RSc0136
Putative acyltransferase protein.
  
    0.470
pit
Probable low-affinity phosphate transporter lipoprotein transmembrane.
  
  
 0.457
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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