STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0156Putative short-chain dehydrogenase/reductase sdr; oxidoreductase protein. (267 aa)    
Predicted Functional Partners:
RSc0157
Hypothetical dihydroneopterin aldolase; protein.
 
     0.874
RSc1568
Probable oxidoreductase protein.
  
     0.752
phbB
Probable acetoacetyl-coa reductase oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.711
RSp0697
Probable dehydrogenase/reductase oxidoreductase protein.
  
     0.711
RSp0033
Probable oxidoreductase protein.
  
     0.691
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.681
RSc1572
Probable d-beta-hydroxybutyrate dehydrogenase (bdh) oxidoreductase protein.
  
     0.642
RSp1422
Putative peptide synthetase protein.
  
 
 0.623
RSc1769
Probable oxidoreductase dehydrogenase signal peptide protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.596
RSc0155
Hypothetical protein of unknown function duf185.
       0.582
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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