STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0161Probable transmembrane aldehyde dehydrogenase oxidoreductase protein; Belongs to the aldehyde dehydrogenase family. (503 aa)    
Predicted Functional Partners:
RSp1591
Probable aldehyde dehydrogenase oxidoreductase protein; Belongs to the aldehyde dehydrogenase family.
  
  
 
0.901
fmt
Probable methionyl-trna formyltransferase protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
      0.751
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.538
RSc0162
Probable transcription regulator protein.
       0.517
gltB
Probable glutamate synthase (large subunit) oxidoreductase protein.
  
  
 0.434
RSc0164
Probable atp-binding abc transporter protein.
  
    0.423
RSc0163
Putative secretion protein hlyd-related protein.
       0.422
RSc0165
Probable abc-type multidrug transport system, permease component abc transporter protein.
       0.422
RSc0166
Probable outer membrane channel lipoprotein.
       0.422
RSc1806
Probable polyketide synthase protein.
  
 
 0.411
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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