Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0162Probable transcription regulator protein. (233 aa)    
Predicted Functional Partners:
RSc0163
Putative secretion protein hlyd-related protein.
 
     0.676
RSc0165
Probable abc-type multidrug transport system, permease component abc transporter protein.
 
     0.676
RSc0164
Probable atp-binding abc transporter protein.
      0.639
RSc0166
Probable outer membrane channel lipoprotein.
       0.615
RSc0161
Probable transmembrane aldehyde dehydrogenase oxidoreductase protein; Belongs to the aldehyde dehydrogenase family.
       0.517
RSc0538
Putative transcription regulator protein.
  
     0.494
RSp0641
Probable non ribosomal peptide synthetase protein.
     
 0.404
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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