STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0163Putative secretion protein hlyd-related protein. (311 aa)    
Predicted Functional Partners:
RSc0165
Probable abc-type multidrug transport system, permease component abc transporter protein.
 
  
 0.968
RSc0164
Probable atp-binding abc transporter protein.
  
 0.966
RSc0166
Probable outer membrane channel lipoprotein.
 
 
 0.877
RSc0162
Probable transcription regulator protein.
 
     0.676
RSp1465
Probable abc-type transport system, permease component abc transporter protein.
  
  
 0.595
RSp0292
Probable typeIsecretion system, atp-binding transmembrane abc transporter protein.
  
 
 0.481
RSp1182
Putative typeIsecretion system, atp-binding transmembrane abc transporter protein.
  
 
 0.481
RSp1462
Putative outer membrane efflux protein.
 
   0.459
RSp0926
Putative outer membrane cation efflux protein.
  
   0.453
RSc0695
Probable porin (omp) abc transporter protein.
  
 
 0.444
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.