STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0163Putative secretion protein hlyd-related protein. (311 aa)    
Predicted Functional Partners:
RSc0164
Probable atp-binding abc transporter protein.
  
 0.965
RSc0165
Probable abc-type multidrug transport system, permease component abc transporter protein.
 
  
 0.963
RSc0166
Probable outer membrane channel lipoprotein.
 
 
 0.876
RSc0162
Probable transcription regulator protein.
 
     0.677
RSp1465
Probable abc-type transport system, permease component abc transporter protein.
  
  
 0.557
RSp0292
Probable typeIsecretion system, atp-binding transmembrane abc transporter protein.
  
 
 0.485
RSp1182
Putative typeIsecretion system, atp-binding transmembrane abc transporter protein.
  
 
 0.485
RSp1462
Putative outer membrane efflux protein.
 
   0.459
RSc0695
Probable porin (omp) abc transporter protein.
  
 
 0.457
RSp0290
Probable typeIsecretion system, outer membrane chanel lipoprotein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
 
 0.457
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.