STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0164Probable atp-binding abc transporter protein. (321 aa)    
Predicted Functional Partners:
RSc0165
Probable abc-type multidrug transport system, permease component abc transporter protein.
  
 0.997
RSc0163
Putative secretion protein hlyd-related protein.
  
 0.966
RSc0166
Probable outer membrane channel lipoprotein.
 
   
 0.807
nosY
Probable nosy transmembrane protein.
  
 
 0.693
nasD
Putative nitrate atp-binding abc transporter protein.
 
    
0.688
RSp0707
Probable amino-acid composite atp-binding transmembrane abc transporter protein.
 
     
0.663
RSc0162
Probable transcription regulator protein.
      0.639
nosR
Probable transmembrane regulatory nosr transcription regulator protein.
  
  
 0.574
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.527
RSc2955
Putative abc-type multidrug transport system, permease component abc transporter protein.
  
  
 0.508
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.