STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0165Probable abc-type multidrug transport system, permease component abc transporter protein. (381 aa)    
Predicted Functional Partners:
RSc0164
Probable atp-binding abc transporter protein.
  
 0.997
RSc0163
Putative secretion protein hlyd-related protein.
 
  
 0.968
nodI
Probable atp-binding abc transporter protein; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
  
 0.955
RSc2956
Probable atp-binding abc transporter protein.
 
  
 0.947
nosF
Probable abc-type copper transport system, atpase component abc transporter protein.
 
  
 0.947
RSc0314
Probable cog1127, abc-type transport system involved in resistance to organic solvents, atpase component abc transporter protein.
      0.901
RSc0409
Probable atp-binding abc transporter protein.
      0.901
cysA
Sulfate/thiosulfate import ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
 
 
    0.899
RSc2037
Probable atp-binding abc transporter protein.
 
      0.899
RSc1794
Probable atp-binding abc transporter protein; Belongs to the ABC transporter superfamily.
 
      0.893
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.