STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0166Probable outer membrane channel lipoprotein. (480 aa)    
Predicted Functional Partners:
RSc0163
Putative secretion protein hlyd-related protein.
 
 
 0.877
RSc0164
Probable atp-binding abc transporter protein.
 
   
 0.807
RSc0165
Probable abc-type multidrug transport system, permease component abc transporter protein.
 
   
 0.805
RSp1197
Putative membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.651
RSc0162
Probable transcription regulator protein.
       0.615
acrB
Putative acriflavin resistance transmembrane protein.
 
   0.532
RSc2726
Probable multidrug resistance transport transmembrane protein.
 
 
 0.527
RSp1113
Probable transmembrane multidrug-efflux system lipoprotein transmembrane.
 
   0.515
acrA
Probable acriflavin resistance lipoprotein a precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.513
RSp0440
Putative multidrug resistance homolog transmembrane protein.
 
 
 0.510
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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