STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0167Probable signal peptide protein. (141 aa)    
Predicted Functional Partners:
RSc0168
Putative amine oxidase protein.
 
     0.953
RSc0173
Putative prenyltransferase transmembrane protein; Belongs to the UbiA prenyltransferase family.
     0.935
RSc0169
Putative nad-dependent epimerase/dehydratase; protein.
 
     0.906
RSc0170
Probable transmembrane protein.
 
     0.879
RSc0172
Putative fad/fmn-containing dehydrogenase transmembrane protein.
 
     0.806
RSc0171
Putative short-chain dehydrogenase/reductase sdr; oxidoreductase protein.
 
     0.800
RSc3030
Hypothetical precursor. signal peptide protein; Protects the bacterial cell from host peptidases.
  
     0.555
RSp1522
Probable transmembrane protein.
  
  
 0.530
RSc3027
Probable signal peptide protein.
  
     0.413
gltB
Probable glutamate synthase (large subunit) oxidoreductase protein.
     
 0.406
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.