STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
RSc0171Putative short-chain dehydrogenase/reductase sdr; oxidoreductase protein. (246 aa)    
Predicted Functional Partners:
RSc0173
Putative prenyltransferase transmembrane protein; Belongs to the UbiA prenyltransferase family.
 
  
 0.954
RSc0172
Putative fad/fmn-containing dehydrogenase transmembrane protein.
 
  
 0.949
RSc0170
Probable transmembrane protein.
 
     0.851
RSc0167
Probable signal peptide protein.
 
     0.799
RSc0168
Putative amine oxidase protein.
 
     0.793
RSc1806
Probable polyketide synthase protein.
  
 
 0.774
RSc0169
Putative nad-dependent epimerase/dehydratase; protein.
 
 
 
 0.709
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.700
RSp1422
Putative peptide synthetase protein.
  
  
 0.522
RSc0174
Probable ketopantoate reductase apba/pane; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
       0.445
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.