STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0171Putative short-chain dehydrogenase/reductase sdr; oxidoreductase protein. (246 aa)    
Predicted Functional Partners:
RSc0173
Putative prenyltransferase transmembrane protein; Belongs to the UbiA prenyltransferase family.
 
  
 0.957
RSc0172
Putative fad/fmn-containing dehydrogenase transmembrane protein.
 
  
 0.951
RSc0170
Probable transmembrane protein.
 
     0.851
RSc0167
Probable signal peptide protein.
 
     0.800
RSc0168
Putative amine oxidase protein.
 
     0.794
RSc0169
Putative nad-dependent epimerase/dehydratase; protein.
 
 
 
 0.711
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.590
RSc1806
Probable polyketide synthase protein.
  
 
 0.537
RSp1422
Putative peptide synthetase protein.
  
  
 0.519
RSc0174
Probable ketopantoate reductase apba/pane; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
       0.445
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.