STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0187Putative cog0716, flavodoxin protein. (176 aa)    
Predicted Functional Partners:
RSc0186
Putative transport-associated; protein.
     0.694
RSc0185
Putative universal stress protein uspa and related nucleotide-binding proteins.
 
     0.630
RSc0189
Putative transport-associated;pep-utilising enzyme, n-terminal; protein.
     0.598
RSp1422
Putative peptide synthetase protein.
   
   0.494
RSc0184
Probable osmosensitive k+ channel his kinase sensor;universal stress protein (usp).
       0.477
RSp1575
Probable amino-acid-binding periplasmic (pbp) abc transporter protein.
  
     0.473
cmtD
Probable hcomoda decarboxylase protein.
 
     0.469
RSc0188
Putative zinc finger, dksa/trar c4-type protein.
       0.432
RSc3236
Probable phage integrase protein.
  
     0.423
RSc3193
Probable bacteriophage t7-related gene protein.
  
     0.416
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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