STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0194Probable zinc-dependent alcohol dehydrogenase oxidoreductase protein. (345 aa)    
Predicted Functional Partners:
adc
Probable acetoacetate decarboxylase (adc) (aad) protein; Catalyzes the conversion of acetoacetate to acetone and carbon dioxide; Belongs to the ADC family.
     
 0.900
RSc0195
Probable ribonucleotide reductase, alpha subunit oxidoreductase protein; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
       0.762
RSp1422
Putative peptide synthetase protein.
     
 0.587
RSp0595
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
   
 
 0.575
RSp1590
Putative fad dependent oxidoreductase; oxidoreductase protein.
  
  
 0.560
RSp1116
Putative low specificity l-threonine aldolase protein; Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde.
      
 0.558
RSp0769
Putative transmembrane protein.
   
  
 0.553
RSc0243
Putative pca transcription factor pcaq; transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
      
 0.550
ppiB
Probable peptidyl-prolyl cis-trans isomerase b (ppiase b) (rotamase b)(cypb protein); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
      
 0.550
RSc1598
Probable two-component transmembrane sensor histidine kinase transcription regulator protein.
      
 0.550
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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