STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0206Putative cog1073, hydrolase of the alpha/beta superfamily signal peptide protein. (342 aa)    
Predicted Functional Partners:
RSc0207
Putative transporter transmembrane protein.
 
     0.913
RSc0630
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
    0.771
RSc0205
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
 
    0.747
RSc0474
Putative 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein.
    
 0.639
RSc1759
3-hydroxyacyl-CoA dehydrogenase; Probable trifunctonal: enoyl-coa hydratase and delta3-cis-delta2-trans-enoyl-coa isomerase and 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein.
    
 0.639
RSc0215
Probable dehydrogenase oxidoreductase protein.
  
  
  0.581
fruK
Probable 1-phosphofructokinase protein; Belongs to the carbohydrate kinase PfkB family.
   
    0.488
RSc0625
Probable transcription regulator protein.
  
     0.442
RSp0433
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.426
RSp1471
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
 
    0.419
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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