STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0240Probable transmembrane protein. (145 aa)    
Predicted Functional Partners:
RSc0239
Probable metallo-dependent hydrolase, composite; protein.
 
     0.840
RSc0241
Putative transmembrane protein.
 
     0.796
RSc0238
Hypothetical of unknown function duf1275; transmembrane protein.
       0.779
RSc0242
Putative amidase related to nicotinamidase protein.
 
    0.635
RSp1035
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology; Belongs to the UPF0276 family.
  
  
 0.546
RSp1036
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
  
 0.535
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.