STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ripBType III effector ripb protein. (490 aa)    
Predicted Functional Partners:
avrA
Type III effector protein avra.
      
 0.811
popP1
Type III effector protein popp1.
      
 0.678
ripG
Type III effector protein gala6.
      
 0.635
ripA
Type III effector protein awr1.
      
 0.635
popP2
Type III effector protein popp2.
      
 0.632
polA
Probable dna polymeraseIprotein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.570
ripT
Type III effector protein ript.
      
 0.546
plpA
Type 4 fimbrial pilin-like signal peptide protein; Belongs to the N-Me-Phe pilin family.
      
 0.541
RSc2365
Putative orn/lys/arg decarboxylase, c-terminal;chey-like; protein.
      
 0.508
RSp0081
Putative gcn5-related n-acetyltransferase protein.
      
 0.461
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.