STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0246Putative calcium binding hemolysin protein. (1156 aa)    
Predicted Functional Partners:
RSp0292
Probable typeIsecretion system, atp-binding transmembrane abc transporter protein.
 
  
 0.828
RSp0291
Probable typeIsecretion system transmembrane protein.
 
  
 0.801
RSp1183
Probable typeIsecretion system transmembrane protein.
 
  
 0.711
RSp1182
Putative typeIsecretion system, atp-binding transmembrane abc transporter protein.
 
  
 0.678
tISRso6a
Probable isrso6-transposase orfa protein.
       0.560
tISRso6b
Isrso6-transposase orfb protein.
       0.560
ftsK
Probable cell division ftsk transmembrane protein; Essential cell division protein that coordinates cell division and chromosome segregation. The N-terminus is involved in assembly of the cell-division machinery. The C-terminus functions as a DNA motor that moves dsDNA in an ATP-dependent manner towards the dif recombination site, which is located within the replication terminus region. Translocation stops specifically at Xer-dif sites, where FtsK interacts with the Xer recombinase, allowing activation of chromosome unlinking by recombination. FtsK orienting polar sequences (KOPS) guid [...]
    
 
 0.540
ftsK1
Probable dna translocase ftsk 1. transmembrane protein; Essential cell division protein that coordinates cell division and chromosome segregation. The N-terminus is involved in assembly of the cell-division machinery. The C-terminus functions as a DNA motor that moves dsDNA in an ATP-dependent manner towards the dif recombination site, which is located within the replication terminus region. Translocation stops specifically at Xer-dif sites, where FtsK interacts with the Xer recombinase, allowing activation of chromosome unlinking by recombination. FtsK orienting polar sequences (KOPS) [...]
    
 
 0.540
RSc0152
Probable lipoprotein.
    
 
 0.535
RSp0244
Probable outer membrane hemin receptor signal peptide protein.
    
 
 0.535
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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