STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0249Putative calcium binding hemolysin protein. (1499 aa)    
Predicted Functional Partners:
RSp0292
Probable typeIsecretion system, atp-binding transmembrane abc transporter protein.
 
  
 0.852
RSp0291
Probable typeIsecretion system transmembrane protein.
 
  
 0.801
amiC
Probable n-acetylmuramoyl-l-alanine amidase amic precursor protein.
   
 
 0.777
RSp0294
Putative hemolysin-type calcium-binding protein.
  
0.724
RSp1034
Probable signal peptide protein.
   
    0.714
RSp1035
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology; Belongs to the UPF0276 family.
   
    0.705
RSc0250
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.703
RSp1182
Putative typeIsecretion system, atp-binding transmembrane abc transporter protein.
 
  
 0.690
RSp0295
Putative hemolysin-type protein.
 
  
0.687
RSp1183
Probable typeIsecretion system transmembrane protein.
 
  
 0.682
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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