STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0255Probable 2-nitropropane dioxygenase, npd; protein. (327 aa)    
Predicted Functional Partners:
RSc0114
Probable dioxygenase related to 2-nitropropane dioxygenase oxidoreductase protein.
     
 0.952
RSp0307
Probable oxidoreductase protein.
  
  
0.941
narK1
Putative nitrite/nitrate transporter transmembrane protein.
    
 0.905
narK2
Probable nitrite/nitrate transporter transmembrane protein.
    
 0.905
RSp1223
Probable high affinity nitrate transporter transmembrane protein.
    
 0.905
RSp0316
Probable dioxygenase oxidoreductase protein.
  
  
0.903
RSp1220
Probable flavoprotein fad oxidoreductase.
     
 0.902
nirB
Probable nitrite reductase nadph (large subunit) oxidoreductase protein; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
     
 0.902
narI
Probable respiratory nitrate reductase transmembrane protein.
    
  0.901
narG
Probable respiratory nitrate reductase alpha chain oxidoreductase protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
  0.900
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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