STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0257Putative type III effector protein with ankyrin repeats. (912 aa)    
Predicted Functional Partners:
RSc1788
Probable ankyrin repeat harboring signal peptide protein.
  
     0.770
RSc0781
Probable ankyrin repeat harboring signal peptide protein.
  
     0.764
RSp0097
Probable ankyrin-repeat harboring protein.
  
     0.751
RSc1806
Probable polyketide synthase protein.
  
 
 0.713
popC
Type III effector protein popc; Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.
  
     0.701
RSp0216
Putative type III effector protein (serine/threonine-protein kinase).
  
 
 0.673
RSp0842
Putative leucine-rich-repeat type III effector protein.
  
     0.654
RSc3358
Putative set domain protein; Miscellaneous; hypothetical/global homology.
  
 
 0.647
RSc1800
Probable lrr-gala family type III effector protein (gala 4).
  
     0.634
RSp0087
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
   
 0.620
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.