STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0275Putative short-chain dehydrogenase/reductase sdr oxidoreductase protein. (236 aa)    
Predicted Functional Partners:
RSc1806
Probable polyketide synthase protein.
  
 
 0.774
RSc0274
Probable acyl coa dehydrogenase oxidoreductase protein.
       0.768
RSc0276
Probable acetyl-coa acetyltransferase (acetoacetyl-coa thiolase) protein; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.768
RSc0270
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology; Belongs to the UPF0225 family.
       0.728
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.700
RSc0273
Probable 2-hydroxychromene-2-carboxylate isomerase protein.
       0.641
RSc0271
Putative hydrolase protein.
  
    0.581
RSc0272
Probable rhodanese-related sulfurtransferase protein.
       0.576
RSc0269
Putative acetyl-coa carboxylase, carboxyltransferase (subunits alpha and beta) protein.
     
 0.562
RSc0267
Putative enoyl-coa hydratase protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
    0.532
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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