STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0284Putative short-chain dehydrogenase/reductase sdr oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (266 aa)    
Predicted Functional Partners:
RSc0283
Putative abc-type fe3+-hydroxamate transport system, periplasmic component abc transporter protein.
       0.773
RSp0697
Probable dehydrogenase/reductase oxidoreductase protein.
  
 
   0.762
RSc1838
Probable oxidoreductase protein.
  
 
   0.693
RSc1572
Probable d-beta-hydroxybutyrate dehydrogenase (bdh) oxidoreductase protein.
  
 
   0.606
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.590
RSc2504
Probable short-chain dehydrogenase/reductase sdr; oxidoreductase protein.
  
 
   0.572
dsbA1
Probable thiol:disulfide interchange signal peptide protein.
       0.541
RSc1806
Probable polyketide synthase protein.
  
 
 0.537
RSc3138
Probable oxidoreductase protein.
  
 
   0.530
RSp1422
Putative peptide synthetase protein.
  
  
 0.519
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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