STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vsrATransmembrane sensor kinase vsra transcription regulator protein. (474 aa)    
Predicted Functional Partners:
vsrD
Response regulator transcription regulator protein.
 
 0.957
vsrC
Response regulator vsrc transcription regulator protein.
 
 
 0.937
narL
Probable nitrate/nitrite response regulator transcription regulator protein.
 
 0.898
RSc0192
Probable response regulator transcription regulator protein.
 
 0.842
RSc2312
Probable two-component response regulator transcription regulator protein.
 
 0.842
RSc3078
Probable response regulator transcription regulator protein.
 
 
 0.842
RSc3161
Probable two component response regulator transcription regulator protein.
 
 0.842
rcsB
Probable capsular synthesis response regulator transcription regulator protein.
 
 
 0.842
RSc1185
Probable transcription regulator protein.
 
 
 0.840
RSp0381
Probable transcription regulator protein.
 
 
 0.839
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.