STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vsrDResponse regulator transcription regulator protein. (210 aa)    
Predicted Functional Partners:
vsrA
Transmembrane sensor kinase vsra transcription regulator protein.
 
 
 0.963
vsrC
Response regulator vsrc transcription regulator protein.
  
   
 0.912
RSc0191
Probable transmembrane two component system sensor kinase transcription regulator protein.
 
 0.856
RSc2311
Putative two-component sensor histidine kinase transcription regulator protein.
 
 0.840
RSc3160
Probable two component sensor histidine kinase transcription regulator protein.
 
 
 0.818
epsR
Negative regulator of exopolysaccharide production transcription regulator protein.
  
   
 0.811
narX
Putative transmembrane nitrate/nitrite sensor kinase transcription regulator protein.
 
 
 0.803
RSc0021
Probable transmembrane sensor histidine kinase transcription regulator protein.
   
 0.791
vsrB
Composite two-component regulatory (sensor kinase and response regulator hybrid) transcription regulator protein.
 
 
 
 0.779
RSc1185
Probable transcription regulator protein.
  
     0.771
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.