STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcaD2Probable b-ketoadipate enol-lactone hydrolase protein. (279 aa)    
Predicted Functional Partners:
pcaC
Putative 4-carboxymuconolactone decarboxylase protein.
 
 0.994
pcaH
Probable protocatechuate 3,4-dioxygenase (beta chain) oxidoreductase protein.
 
   
 0.940
pcaG
Probable protocatechuate 3,4-dioxygenase (alpha chain) oxidoreductase protein.
 
   
 0.928
RSp1472
Probable 4-carboxymuconolactone decarboxylase protein.
 
  
 0.918
pcaD
Probable b-ketoadipate enol-lactone hydrolase transmembrane protein.
  
  
 
0.916
pcaI
Probable 3-oxoadipate coa-transferase subunit a protein.
   
 
 0.913
pcaJ
Probable 3-oxoadipate coa-transferase subunit b protein.
   
 
 0.906
RSc0631
Probable transmembrane protein.
    
 0.902
pcaB
Probable 3-carboxy-cis,cis-muconate cycloisomerase protein.
  
 0.873
RSc0299
Putative prolin-rich signal peptide protein.
       0.773
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.