STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0300Probable transcription regulator protein. (290 aa)    
Predicted Functional Partners:
RSc3411
Probable transcription regulator protein.
  
     0.721
RSc2255
Probable transcription regulator protein.
  
     0.666
RSc0299
Putative prolin-rich signal peptide protein.
       0.639
pcaD2
Probable b-ketoadipate enol-lactone hydrolase protein.
     
 0.635
RSc0757
Putative transcription regulator protein.
  
     0.615
RSc0301
Fumarylacetoacetate (FAA) hydrolase; Putative 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) oxidoreductase protein.
       0.570
RSc3329
Probable amino-acid-binding periplasmic (pbp) abc transporter protein.
  
     0.540
RSc2428
Probable amino acid-binding periplasmic (pbp) abc transporter protein.
  
     0.518
RSp0701
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.494
RSp0706
Probable amino-acid composite atp-binding transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
  
     0.460
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.