STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0317Probable transmembrane protein. (408 aa)    
Predicted Functional Partners:
RSc0310
Putative signal peptide protein.
 
     0.778
RSc1737
Putative transmembrane outer membrane porin signal peptide protein.
  
     0.724
RSc1012
Putative site-specific recombinase transmembrane protein.
 
     0.714
RSp0660
Probable porin protein.
  
     0.691
RSp0116
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.689
RSc0316
Putative cog3218, abc-type uncharacterized transport system, auxiliary component abc transporter protein.
       0.665
RSc2657
Probable transmembrane protein.
  
     0.660
RSc0314
Probable cog1127, abc-type transport system involved in resistance to organic solvents, atpase component abc transporter protein.
       0.655
RSc0315
Probable abc-type transport system involved in resistance to organic solvents, periplasmic component abc transporter protein.
       0.655
RSc3094
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.652
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.