STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0328Putative hydrolase transmembrane protein. (215 aa)    
Predicted Functional Partners:
RSc0329
Putative ferredoxin 2fe-2s protein.
 
     0.757
dac
Probable penicillin-binding (d-alanyl-d-alanine carboxypeptidase) transmembrane protein; Belongs to the peptidase S11 family.
 
     0.715
RSc0344
Hypothetical glutamate--cysteine ligase related protein.
  
     0.606
RSc0326
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology; Belongs to the UPF0250 family.
       0.590
RSc2555
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.576
RSc2740
Probable transmembrane protein.
 
     0.553
trpS
Probable tryptophanyl-trna synthetase (syw protein).
  
    0.503
secB
Probable protein-export protein secb; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
    0.489
RSc0270
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology; Belongs to the UPF0225 family.
  
    0.446
slt
Probable soluble lytic murein transglycosylase precursor transmembrane protein.
  
     0.435
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.