STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0328Putative hydrolase transmembrane protein. (215 aa)    
Predicted Functional Partners:
RSc0329
Putative ferredoxin 2fe-2s protein.
 
     0.776
dac
Probable penicillin-binding (d-alanyl-d-alanine carboxypeptidase) transmembrane protein; Belongs to the peptidase S11 family.
 
     0.770
RSc0326
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology; Belongs to the UPF0250 family.
       0.670
RSc2740
Probable transmembrane protein.
 
     0.643
RSc0344
Hypothetical glutamate--cysteine ligase related protein.
  
     0.606
RSc2555
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.574
trpS
Probable tryptophanyl-trna synthetase (syw protein).
  
    0.525
secB
Probable protein-export protein secb; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
    0.492
RSc0317
Probable transmembrane protein.
 
     0.470
queF
Putative gtp cyclohydrolaseI protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
 
     0.467
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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