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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0339Probable transmembrane protein. (171 aa)    
Predicted Functional Partners:
RSc2516
Osmoprotectant transport system permease protein; Putative abc type transporter : periplasmic glycine betaine / choline-binding lipoprotein and permease components transmembrane.
 
    0.532
RSc3299
Probable transmembrane protein.
  
     0.521
coxM
Probable cytochrome c oxidase polypeptide II (cytochrome bb3 subunit 2) transmembrane protein.
 
 
 0.515
RSc0726
Probable type 4 fimbrial biogenesis pilw related protein transmembrane.
  
     0.504
RSc0994
Probable transmembrane protein.
  
     0.497
RSc0176
Probable lipoprotein.
  
     0.490
RSp1269
Probable signal peptide protein.
  
     0.483
RSc0725
Probable type 4 fimbrial biogenesis pilx-related protein transmembrane.
  
     0.453
RSc0316
Putative cog3218, abc-type uncharacterized transport system, auxiliary component abc transporter protein.
  
     0.452
rseA
Putative transmembrane sigma-e factor negative regulatory transcription regulator protein.
  
    0.443
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.