STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0352Probable peptidase transmembrane protein; Belongs to the peptidase S41A family. (549 aa)    
Predicted Functional Partners:
thiF
Putative thif transmembrane protein.
  
    0.724
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
  
  
 0.716
nudH
Probable (di)nucleoside polyphosphate hydrolase protein; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
    
 0.614
RSp0116
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
   0.604
RSc0299
Putative prolin-rich signal peptide protein.
 
   0.594
RSc1411
Putative membrane-associated zn-dependent protease 1 transmembrane protein; Belongs to the peptidase M50B family.
 
  
 0.523
RSc0246
Putative calcium binding hemolysin protein.
  
   0.510
RSc3101
Putative serine protease protein.
  
   0.510
RSp0272
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
   0.510
RSp0559
Putative transmembrane protein.
  
   0.510
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.