close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0359Putative competence protein f-related protein. (240 aa)    
Predicted Functional Partners:
RSc1120
Hypothetical transmembrane protein.
 
  
 0.929
smf
Putative smf protein (predicted rossmann fold nucleotide-binding protein involved in dna uptake).
 
 
 0.927
RSc0338
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
  
 0.880
radC
Probable dna repair protein radc homolog; Belongs to the UPF0758 family.
 
    0.759
RSc3265
Hypothetical protein; Macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif; Belongs to the UPF0102 family.
 
    0.742
radC2
Probable dna repair radc-like protein; Belongs to the UPF0758 family.
 
    0.734
flgC
Probable flagellar basal-body rod protein flgc; Belongs to the flagella basal body rod proteins family.
   
   0.721
tyrA
Putative prephenate dehydrogenase oxidoreductase protein.
   
  
 0.700
apt
Probable adenine phosphoribosyltransferase (aprt) protein; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.667
bioC
Putative biotin synthesis protein (methyltransferase); Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.
  
    0.641
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.