STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0359Putative competence protein f-related protein. (240 aa)    
Predicted Functional Partners:
smf
Putative smf protein (predicted rossmann fold nucleotide-binding protein involved in dna uptake).
 
 
 0.921
RSc1120
Hypothetical transmembrane protein.
 
  
 0.917
RSc0338
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
  
 0.864
RSc3265
Hypothetical protein; Macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif; Belongs to the UPF0102 family.
 
    0.743
apt
Probable adenine phosphoribosyltransferase (aprt) protein; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.713
bioC
Putative biotin synthesis protein (methyltransferase); Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.
       0.705
tyrA
Putative prephenate dehydrogenase oxidoreductase protein.
   
    0.695
flgC
Probable flagellar basal-body rod protein flgc; Belongs to the flagella basal body rod proteins family.
   
   0.686
yibK
Putative trna/rrna methyltransferase protein; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.
       0.675
RSp0254
Probable signal transduction eal-ggdef domains transmembrane protein.
  
    0.653
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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