STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0368Probable transmembrane protein. (69 aa)    
Predicted Functional Partners:
RSc0369
Putative transmembrane cytochrome oxidase complex biogenesis factor transmembrane protein.
 
     0.911
RSc0370
Probable transmembrane protein.
 
     0.908
ctaA
Putative heme o oxygenase (cytochrome aa3-controlling) transmembrane protein.
 
    0.868
RSc0403
Conserved hypothetical protein; Displays ATPase and GTPase activities.
      
 0.830
RSp0272
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
      
 0.830
ctaB
Probable protoheme ix farnesyltransferase (heme o synthase) transmembrane protein; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
     0.766
RSc0999
Putative periplasmic cytochrome type-c oxidoreductase signal peptide protein.
  
     0.708
tolA
Probable tola-related transport transmembrane protein.
  
     0.650
RSc1097
Probable transcription regulator protein.
      
 0.631
RSc3149
Putative transcription regulator protein.
      
 0.631
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.