STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0373Probable lipoprotein. (200 aa)    
Predicted Functional Partners:
ctaB
Probable protoheme ix farnesyltransferase (heme o synthase) transmembrane protein; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
  
 0.901
ctaA
Putative heme o oxygenase (cytochrome aa3-controlling) transmembrane protein.
 
 
 0.831
RSc0038
Putative transmembrane protein.
 
   
 0.741
RSc0369
Putative transmembrane cytochrome oxidase complex biogenesis factor transmembrane protein.
 
  
 0.716
ctaG
Probable cytochrome c oxidase assembly transmembrane protein.
 
 
 0.713
coxB
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.697
coxM
Probable cytochrome c oxidase polypeptide II (cytochrome bb3 subunit 2) transmembrane protein.
 
 0.688
RSc0370
Probable transmembrane protein.
 
     0.670
RSc2784
Putative ipr012335 thioredoxin fold transmembrane protein.
 
 
 0.661
RSc0333
Putative thiol-disulfide isomerase or thioredoxin transmembrane protein.
 
 
 0.657
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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