STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nasDPutative nitrate atp-binding abc transporter protein. (268 aa)    
Predicted Functional Partners:
nasE
Putative nitrate transmembrane abc transporter protein.
 0.998
nasF
Putative nitrate transporter protein.
 0.998
nasA
Probable nitrate reductase large subunit oxidoreductase protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.972
narG
Probable respiratory nitrate reductase alpha chain oxidoreductase protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
  0.900
narH
Probable respiratory nitrate reductase oxidoreductase protein.
     
  0.900
narI
Probable respiratory nitrate reductase transmembrane protein.
     
  0.900
RSp1508
Probable transmembranee abc transporter protein.
 
 0.896
RSp1465
Probable abc-type transport system, permease component abc transporter protein.
 
      0.892
ssuC
Putative aliphatic sulfonates transmembrane abc transporter protein.
 
 0.890
RSc1200
Probable cog0600, abc-type nitrate/sulfonate/bicarbonate transport system, permease component abc transporter protein.
 
 0.826
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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