STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0403Conserved hypothetical protein; Displays ATPase and GTPase activities. (296 aa)    
Predicted Functional Partners:
RSc0402
Putative peptidase protein.
      0.897
ptsN
Nitrogen PTS system EIIA component; Putative nitrogen regulatory IIa (enzyme IIa-ntr) (phosphotransferase enzyme II, a component) transcription regulator protein.
  
  
 0.861
RSc0368
Probable transmembrane protein.
      
 0.830
RSp0272
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
      
 0.830
cafA
Probable ribonuclease g (rnase g) (cytoplasmic axial filament protein).
 
 
 
 0.765
rne
Probable ribonuclease e (rnase e) protein; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
   
 
 0.724
RSc0407
Putative sigma-54 modulation protein.
 
  
 0.697
RSc1097
Probable transcription regulator protein.
      
 0.631
RSc3149
Putative transcription regulator protein.
      
 0.631
mrsA
Putative phosphoglucosamine mutase (mrsa protein); Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
   
 0.617
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.