STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0407Putative sigma-54 modulation protein. (117 aa)    
Predicted Functional Partners:
rpsU
Probable 30s ribosomal protein s21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.913
rplY
Putative 50s ribosomal protein l25 (general stress protein ctc); This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
   0.904
rpsI
Probable 30s ribosomal protein s9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.901
rpmA
Probable 50s ribosomal protein l27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.901
rpmH
Probable 50s ribosomal protein l34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.900
rpmC
Probable 50s ribosomal protein l29; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.898
rplI
Probable 50s ribosomal protein l9; Binds to the 23S rRNA.
  
   0.896
rpsP
Probable 30s ribosomal protein s16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.893
rpmB
Probable 50s ribosomal protein l28; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.893
rpmG
Probable 50s ribosomal protein l33; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.893
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.