STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0409Probable atp-binding abc transporter protein. (262 aa)    
Predicted Functional Partners:
RSc0411
Probable transmembrane protein.
  
 0.998
RSc2417
Putative permease transmembrane protein.
 
 
 0.987
RSc2416
Putative permease transmembrane protein.
   
 0.984
lptA
Putative signal peptide protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
  
  
 0.972
RSc0165
Probable abc-type multidrug transport system, permease component abc transporter protein.
   
 0.937
RSc3340
Probable transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
      0.885
RSp0015
Probable amino-acid transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
      0.884
RSc0413
Putative sugar isomerase (sis) protein; Belongs to the SIS family. GutQ/KpsF subfamily.
 
  
 0.840
lpxA
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.835
yrbI
Probable 3-deoxy-d-manno-octulosonate 8-phosphate(kdo 8-p)phosphatase protein.
 
  
 0.830
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.