STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0411Probable transmembrane protein. (210 aa)    
Predicted Functional Partners:
RSc0409
Probable atp-binding abc transporter protein.
  
 0.998
lptA
Putative signal peptide protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
 
 
 0.989
RSc2417
Putative permease transmembrane protein.
 
 
 0.957
RSc2416
Putative permease transmembrane protein.
  
 
 0.928
yrbI
Probable 3-deoxy-d-manno-octulosonate 8-phosphate(kdo 8-p)phosphatase protein.
  
  
 0.908
RSc2234
Probable transmembrane protein.
  
     0.756
RSc0413
Putative sugar isomerase (sis) protein; Belongs to the SIS family. GutQ/KpsF subfamily.
  
  
 0.755
RSc1978
Probable transmembrane protein.
  
     0.738
RSc2765
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.731
RSc2657
Probable transmembrane protein.
  
     0.729
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.