STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0411Probable transmembrane protein. (210 aa)    
Predicted Functional Partners:
RSc0409
Probable atp-binding abc transporter protein.
  
 0.998
lptA
Putative signal peptide protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
 
 
 0.992
RSc2417
Putative permease transmembrane protein.
 
 
 0.953
yrbI
Probable 3-deoxy-d-manno-octulosonate 8-phosphate(kdo 8-p)phosphatase protein.
  
  
 0.924
RSc2416
Putative permease transmembrane protein.
  
 
 0.920
RSc0413
Putative sugar isomerase (sis) protein; Belongs to the SIS family. GutQ/KpsF subfamily.
  
  
 0.851
RSc2234
Probable transmembrane protein.
  
     0.756
RSc1978
Probable transmembrane protein.
  
     0.738
RSc2765
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.731
RSc1181
Probable cog1807, 4-amino-4-deoxy-l-arabinose transferase and related glycosyltransferases of pmt family transmembrane protein.
  
   
 0.729
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.