STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
RSc0421Putative multidrug-efflux transporter transmembrane protein. (387 aa)    
Predicted Functional Partners:
ssb
Probable single-strand binding protein (ssb) (helix-destabilizing protein); Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
       0.737
RSp0422
Probable siderophore synthetase component protein.
  
  
 0.648
RSc2918
Putative extracytoplasmic function sigma factor (iron-regulated) transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
   
  
 0.644
uvrA1
Probable excinuclease abc subunit a (dna repair atp-binding) abc transporter protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.641
RSc2920
Putative hydroxamate-type ferrisiderophore receptor signal peptide protein.
   
  
 0.635
RSc2919
Putative iron transport-sensory transduction transmembrane protein.
      
 0.620
RSc1806
Probable polyketide synthase protein.
     
 0.604
RSp0419
Probable siderophore synthetase component protein.
  
  
 0.595
ssd
Probable staphyloferrin b siderophore synthesis decarboxylase protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
  
 0.566
RSp0100
Putative ferrisiderophore receptor protein.
     
 0.558
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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