STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0428Putative polysaccharide deacetylase transmembrane protein. (287 aa)    
Predicted Functional Partners:
RSc0430
Putative signal peptide protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.948
RSc0429
Putative mmpl exporter transmembrane protein.
 
     0.947
RSc0431
Probable cog4261 : predicted acyltransferase protein.
 
     0.947
RSc0432
Putative amp-dependent synthetase or ligase protein.
 
     0.939
RSc0433
Probable transmembrane protein.
 
     0.936
RSc0426
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.906
RSc0425
Putative cog4706, 3-hydroxylacyl-(acyl carrier protein) dehydratase.
 
     0.905
RSc0427
Probable 3-oxoacyl-[acyl-carrier-protein] synthase (beta-ketoacyl-acp synthase); Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.807
RSc0436
Putative glycosyl transferase, family 2; protein.
 
  
 0.746
hmsR
Putative hemin storage transmembrane protein.
 
  
 0.706
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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