STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0447Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (446 aa)    
Predicted Functional Partners:
RSc0445
Probable peptidase signal peptide protein.
 
     0.808
RSc2734
Probable response regulator transcription regulator protein.
  
     0.668
RSc3192
Probable phage-related lysozyme (muraminidase) protein.
  
    0.482
RSc0883
Putative lysozyme (endolysin) protein.
  
    0.478
RSc2923
Putative transmembrane sensor histidine kinase transcription regulator protein.
  
     0.450
RSp0220
Probable two-component transmembrane sensor histidine kinase transcription regulator protein.
  
     0.437
repA
Probable repa replicase protein.
  
     0.434
queF
Putative gtp cyclohydrolaseI protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
       0.432
RSc0315
Probable abc-type transport system involved in resistance to organic solvents, periplasmic component abc transporter protein.
  
     0.424
RSc3360
Hypothetical transmembrane protein.
  
     0.413
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.