STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0450Probable atp-sensitive inward rectifier potassium channel related transmembrane protein. (307 aa)    
Predicted Functional Partners:
RSc3183
Probable hemagglutinin-related signal peptide protein.
  
     0.623
RSp1536
Probable hemagglutinin-related signal peptide protein.
  
     0.622
RSp0540
Probable hemagglutinin-related protein.
  
     0.590
RSc0887
Probable hemagglutinin-related protein.
  
     0.585
RSp1539
Probable hemagglutinin-related protein.
  
     0.566
RSc0787
Probable transmembrane protein.
  
     0.551
RSp1173
Probable cytochrome c peroxidase transmembrane protein.
  
     0.540
RSp1535
Probable activation/secretion signal peptide protein.
  
     0.532
acpA
Putative acid phosphatase protein.
  
     0.531
ilvA
Probable threonine amonia-lyase (threonine dehydratase, threonine deaminase) transmembrane protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the s [...]
       0.527
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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