STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0452Putative transmembrane protein. (415 aa)    
Predicted Functional Partners:
dac
Probable penicillin-binding (d-alanyl-d-alanine carboxypeptidase) transmembrane protein; Belongs to the peptidase S11 family.
  
  
 0.739
RSc1609
Putative d-alanyl-d-alanine-endopeptidase (penicillin-binding protein); Belongs to the peptidase S11 family.
  
  
 0.739
RSc1142
Putative peptidase m50; transmembrane protein.
  
  
 0.695
RSc2524
Putative zn-dependent protease transmembrane protein.
  
  
 0.695
RSc0453
Probable transmembrane protein.
       0.580
RSc0451
Probable transmembrane protein.
       0.545
lysA
Probable diaminopimelate decarboxylase protein; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 0.441
ssd
Probable staphyloferrin b siderophore synthesis decarboxylase protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
  
 0.441
RSp0679
Putative orn/dap/arg decarboxylase 2; protein.
  
  
 0.441
RSc2919
Putative iron transport-sensory transduction transmembrane protein.
  
     0.440
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.