STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0453Probable transmembrane protein. (193 aa)    
Predicted Functional Partners:
RSc0452
Putative transmembrane protein.
       0.580
RSc0454
Putative fe-s oxidoreductase fad/fmn-containing dehyfrogenase oxidoreductase protein.
       0.574
RSc0995
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.494
RSc0455
Putative nucleotide-binding protein.
       0.471
RSc0451
Probable transmembrane protein.
       0.419
RSc0459
Hypothetical transmembrane protein.
 
     0.415
RSp0825
Putative cog0421, spermidine synthase protein.
 
     0.411
RSc2227
Putative predicted divalent heavy-metal cations transporter transmembrane protein.
 
     0.410
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.