STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0472Putative transcription regulator protein. (213 aa)    
Predicted Functional Partners:
RSc0474
Putative 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein.
 
  
 0.730
RSc2765
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.670
RSc0473
Putative acyl-coa dehydrogenase oxidoreductase protein.
     
 0.630
RSc0299
Putative prolin-rich signal peptide protein.
  
     0.587
RSc2558
Hypothetical the tetratrico peptide repeat containing protein.
  
     0.570
RSc2082
Putative lipase transmembrane protein.
  
     0.541
RSc0411
Probable transmembrane protein.
  
     0.496
RSc2086
Putative transcription regulator protein.
  
     0.493
RSc3098
Putative gcn5-related n-acetyltransferase; protein.
  
    0.491
RSp0636
Putative rna polymerase sigma factor containing a tpr repeat domain transcription regulator protein; Belongs to the sigma-70 factor family.
  
     0.459
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.