STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0492Putative dna binding; transmembrane protein. (251 aa)    
Predicted Functional Partners:
RSc0493
Probable protein of unknown function duf583.
 
    0.899
erpA
Conserved hypothetical protein; Required for insertion of 4Fe-4S clusters.
  
    0.524
rpsI
Probable 30s ribosomal protein s9; Belongs to the universal ribosomal protein uS9 family.
       0.514
rplM
Probable 50s ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.509
RSc2224
Putative bacterial ring hydroxylating dioxygenase, alpha subunit; EC_number 1.14.1.-.
  
     0.448
RSc2858
Putative zinc protease protein; EC_number 3.4.99.-.
  
     0.443
RSc2835
Putative ipr002886 peptidase m23b family transmembrane protein.
  
     0.437
RSc2450
Putative stearoyl-coa desaturase oxidoreductase protein.
  
     0.408
RSc0306
Putative esterase of the alpha-beta hydrolase superfamily protein.
  
     0.406
RSc1166
Probable tpr domain signal peptide protein.
  
     0.404
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.