STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0493Probable protein of unknown function duf583. (134 aa)    
Predicted Functional Partners:
RSc0492
Putative dna binding; transmembrane protein.
 
    0.917
RSc2835
Putative ipr002886 peptidase m23b family transmembrane protein.
 
   
 0.735
erpA
Conserved hypothetical protein; Required for insertion of 4Fe-4S clusters.
       0.652
rpsI
Probable 30s ribosomal protein s9; Belongs to the universal ribosomal protein uS9 family.
       0.538
rplM
Probable 50s ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.527
RSc2858
Putative zinc protease protein; EC_number 3.4.99.-.
  
     0.514
pilI
Putative twitching motility protein.
 
     0.486
RSc0672
Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator); Putative composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein.
 
     0.460
RSc0316
Putative cog3218, abc-type uncharacterized transport system, auxiliary component abc transporter protein.
   
    0.446
pilJ
Putative twitching motility transmembrane protein.
  
     0.431
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.