STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0535Hypothetical signal peptide protein. (152 aa)    
Predicted Functional Partners:
RSc0536
Probable short-chain dehydrogenase transmembrane protein.
 
  0.954
RSc0537
Putative transmembrane acyl-coa dehydrogenase oxidoreductase protein.
  
 0.806
RSc2766
Probable guanyl-specific ribonuclease precursor signal peptide protein.
  
     0.668
katE
Probable catalase hydroperoxidase hpII oxidoreductase protein; Belongs to the catalase family.
   
 0.623
icmF
Putative methylmalonyl-coa mutase protein; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
 
  
 0.590
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.550
RSc0121
Probable acyl-coa dehydrogenase oxidoreductase protein.
 
 0.545
RSc1806
Probable polyketide synthase protein.
  
 0.533
trmB
Putative trna (guanine-n(7)-)-methyltransferase (trna(m7g46)-methyltransferase) protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
     0.522
RSc0474
Putative 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein.
  
 0.514
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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